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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163384290_163386133_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
163384290 - 163386133
Intron Length:
1844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
TCTCTTTTAAAA
Flanking Amino Acid:
QRKGFEPLVNYSRGLTARKV
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
71.3
35.3
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
71.8
0.49
1.1
74.9
32.4
Minor 5ss
45.4
-0.5
3
63.4
41.6
Minor BPS
63.1
0.41
1.4
69.31
37

Associated Gene:

Gene:
DCT
Ensembl Gene ID:
ENSAPLG00000013837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014438
163367528 - 163397173
29646