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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163386192_163397105_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163386192 - 163397105
Intron Length:
10914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCC
Flanking Amino Acid:
VVSLVKGRSAGKSECISTNQ
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.7
81
29.9
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
64.5
0.44
1.6
73.08
38.7

Associated Gene:

Gene:
DCT
Ensembl Gene ID:
ENSAPLG00000013837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014438
163367528 - 163397173
29646