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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163408852_163418643_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
163408852 - 163418643
Intron Length:
9792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTACCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTCACC
Flanking Amino Acid:
EDCWNGHTKARYLPEIMNDG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
64.3
0.32
0.9
57.7
32
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
56
0.17
2
70.06
40.6

Associated Gene:

Gene:
GPC6
Ensembl Gene ID:
ENSAPLG00000026575
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047080
163408019 - 163481181
73163