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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16345111_16346707_R

Intron Information:

Intron Rank:
145651
Intron Class:
major
Intron Phase:
Intron Coordinates:
16345111 - 16346707
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ATAGACTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
74.1
0.54
0.8
69.6
29.7
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
53.9
0.2
1.9
72.27
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046077
16344927 - 16347606
2680