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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16346781_16347447_R

Intron Information:

Intron Rank:
145652
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16346781 - 16347447
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTGGGC
5'SS Class:
weak_major
3'SS Sequence:
TTCCCTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TCTTCCCTATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.3
47.8
42.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.5
0.73
0.8
77.2
29.9
Minor 5ss
24.9
-2.9
3.4
33.9
41.6
Minor BPS
52.7
-0
2
63.76
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025744
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046077
16344927 - 16347606
2680