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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_163771983_163780659_R

Intron Information:

Intron Rank:
144165
Intron Class:
major
Intron Phase:
Intron Coordinates:
163771983 - 163780659
Intron Length:
8677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.9
85.8
26
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024830
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026276
163767939 - 163781222
13284