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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_164994774_164998819_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
164994774 - 164998819
Intron Length:
4046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTCCTCTATG
Flanking Amino Acid:
DSEETLANRRKEFISHLRLY
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
81.4
0.71
0.8
77.1
30.5
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
54.4
-0
2
64.71
43

Associated Gene:

Gene:
GPC5
Ensembl Gene ID:
ENSAPLG00000007039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007299
164989741 - 165145762
156022