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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_164998954_165021106_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
164998954 - 165021106
Intron Length:
22153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCCTTCTAAT
Flanking Amino Acid:
RVHRPELSEQVNKVCGPPVR
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
93.1
0.97
0.5
93.2
15.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
49.2
0.02
2
75.24
41

Associated Gene:

Gene:
GPC5
Ensembl Gene ID:
ENSAPLG00000007039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007299
164989741 - 165145762
156022