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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165021802_165130446_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
165021802 - 165130446
Intron Length:
108645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATT
Flanking Amino Acid:
LISRNAAAFQETFETLIRLA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.7
0.83
0.8
81
35.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
79.8
1.01
1
88.33
30.2

Associated Gene:

Gene:
GPC5
Ensembl Gene ID:
ENSAPLG00000007039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007299
164989741 - 165145762
156022