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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165130609_165145072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
165130609 - 165145072
Intron Length:
14464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGTAATTACTT
Flanking Amino Acid:
LRGVPDSPRAGVDLQVCTSK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.7
77.2
31.6
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
49.7
0.05
2
73.95
43

Associated Gene:

Gene:
GPC5
Ensembl Gene ID:
ENSAPLG00000007039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007299
164989741 - 165145762
156022