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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165183445_165186171_R

Intron Information:

Intron Rank:
130141
Intron Class:
major
Intron Phase:
Intron Coordinates:
165183445 - 165186171
Intron Length:
2727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTGCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTCTTGCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
67.9
38.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
70.7
0.47
1
65.9
39.8
Minor 5ss
36.9
-1.5
3.3
55
42.2
Minor BPS
45.7
-0.3
2.1
61.23
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033437
165182697 - 165189466
6770