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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165186212_165188410_R

Intron Information:

Intron Rank:
130142
Intron Class:
major
Intron Phase:
Intron Coordinates:
165186212 - 165188410
Intron Length:
2199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TATGCAAGGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
83.3
29.1
Major BPS
71.3
0.53
1
61.3
37
Major PPT
89
0.88
0.6
88.1
21.8
Minor 5ss
44
-0.6
3.2
62.3
43.4
Minor BPS
37.8
-0.9
2.1
50.3
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033437
165182697 - 165189466
6770