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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165190372_165214758_R

Intron Information:

Intron Rank:
130146
Intron Class:
major
Intron Phase:
Intron Coordinates:
165190372 - 165214758
Intron Length:
24387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGAGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTAATTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
69.7
0.44
1
61.9
39.8
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
56
0.27
1.7
74.64
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034372
165182697 - 165214848
32152