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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165192914_165194454_F

Intron Information:

Intron Rank:
131443
Intron Class:
major
Intron Phase:
Intron Coordinates:
165192914 - 165194454
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCATCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74
0.54
0.8
67.7
32.1
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
62.7
0.39
1.8
67.7
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039119
165192087 - 165194680
2594