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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165282128_165304393_F

Intron Information:

Intron Rank:
146338
Intron Class:
major
Intron Phase:
Intron Coordinates:
165282128 - 165304393
Intron Length:
22266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
ACATTTGTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
46.8
-0.2
2
55.8
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044182
165281895 - 165305134
23240
ENSAPLT00000039381
165281895 - 165332993
51099
ENSAPLT00000032553
165281895 - 165418284
136390