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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165304442_165332785_F

Intron Information:

Intron Rank:
146341
Intron Class:
major
Intron Phase:
Intron Coordinates:
165304442 - 165332785
Intron Length:
28344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
79.2
30
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.9
78.3
34.1
Minor 5ss
43.3
-0.7
2.9
54.9
44.7
Minor BPS
51.6
0.03
1.9
67.43
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039381
165281895 - 165332993
51099