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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165304442_165417793_F

Intron Information:

Intron Rank:
146339
Intron Class:
major
Intron Phase:
Intron Coordinates:
165304442 - 165417793
Intron Length:
113352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
TCGATCTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
79.2
30
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
84.7
0.78
0.6
84.6
23.1
Minor 5ss
43.3
-0.7
2.9
54.9
44.7
Minor BPS
47.9
-0
1.8
64.41
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028843
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032553
165281895 - 165418284
136390