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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165468409_165472298_R

Intron Information:

Intron Rank:
145927
Intron Class:
major
Intron Phase:
Intron Coordinates:
165468409 - 165472298
Intron Length:
3890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTCCCATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCCCATAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
65.5
0.35
1.1
65.1
35.1
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
61.3
0.22
1.8
71.83
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025915
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028605
165468121 - 165474794
6674