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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_165472616_165474722_R

Intron Information:

Intron Rank:
145929
Intron Class:
major
Intron Phase:
Intron Coordinates:
165472616 - 165474722
Intron Length:
2107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTCAGTGTT
5'SS Class:
major
3'SS Sequence:
GTATCTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.4
70.9
39.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.4
0.64
0.9
73.6
36.7
Minor 5ss
36.6
-1.5
3.4
56
42.4
Minor BPS
63.9
0.52
2.1
88.62
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025915
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028605
165468121 - 165474794
6674