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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1658660_1660454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1658660 - 1660454
Intron Length:
1795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
TTGTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCATTCTGACTC
Flanking Amino Acid:
ENITVVKGVRLSDSVIDRMK
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
59.5
39.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
24.9
-2.9
3
22.5
36.9
Minor BPS
46.9
-0.2
1.7
52.09
39.4

Associated Gene:

Gene:
CHCHD3
Ensembl Gene ID:
ENSAPLG00000005618
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005804
1658579 - 1751514
92936
ENSAPLT00000042299
1657693 - 1809286
151594
ENSAPLT00000017919
1657693 - 1806853
149161