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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_166095495_166100668_F

Intron Information:

Intron Rank:
136186
Intron Class:
major
Intron Phase:
Intron Coordinates:
166095495 - 166100668
Intron Length:
5174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.8
0.72
0.8
75.5
32.9
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023387
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020338
166095388 - 166102566
7179