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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_166437281_166437786_F

Intron Information:

Intron Rank:
139720
Intron Class:
major
Intron Phase:
Intron Coordinates:
166437281 - 166437786
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAAACCATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
52.3
0.15
2
72.36
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025131
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033466
166437088 - 166438166
1079