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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16690697_16693610_R

Intron Information:

Intron Rank:
135056
Intron Class:
major
Intron Phase:
Intron Coordinates:
16690697 - 16693610
Intron Length:
2914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTCTGCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AATTTGAGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
69.4
0.44
0.8
64.3
31.1
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
42.4
-0.5
2.2
55.48
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026688
16665247 - 16693949
28703