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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16696283_16696707_F

Intron Information:

Intron Rank:
131658
Intron Class:
major
Intron Phase:
Intron Coordinates:
16696283 - 16696707
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATGT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATGACTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
70.9
35.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
33.6
-1.9
3.2
47.6
47.9
Minor BPS
49.6
0.05
2
71.86
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020667
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037963
16696124 - 16697825
1702