About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_167159362_167159750_R

Intron Information:

Intron Rank:
153140
Intron Class:
major
Intron Phase:
Intron Coordinates:
167159362 - 167159750
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TCTCTCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
76.7
0.6
0.8
77.5
29.7
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
61.3
0.44
1.6
76.71
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034195
167158397 - 167161757
3361