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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_167159886_167161731_R

Intron Information:

Intron Rank:
153141
Intron Class:
major
Intron Phase:
Intron Coordinates:
167159886 - 167161731
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGTTCCTCATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
71.7
0.49
0.9
66.1
35.3
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
50
-0.1
2
62.21
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029962
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034195
167158397 - 167161757
3361