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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16721583_16725934_F

Intron Information:

Intron Rank:
137695
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
16721583 - 16725934
Intron Length:
4352

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
ATG|GTAAATAGA
5'SS Class:
major
3'SS Sequence:
TTCCATTTTTCAA|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GCTTCATAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.1
37.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
46.5
-0.2
3.2
76.4
37.3
Minor 5ss
34.6
-1.8
2.8
39.5
40.9
Minor BPS
48.8
-0
2
62.66
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039792
16711081 - 16726312
15232