About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_167394000_167459564_F

Intron Information:

Intron Rank:
132012
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
167394000 - 167459564
Intron Length:
65565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
52.9
0.07
1.2
50.9
46
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020902
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026624
167393863 - 167459699
65837