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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_167410081_167421000_F

Intron Information:

Intron Rank:
132011
Intron Class:
major
Intron Phase:
Intron Coordinates:
167410081 - 167421000
Intron Length:
10920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCCAGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
81.6
32.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
45.1
-0.5
3.4
69
41.9
Minor BPS
59
0.36
2
86.34
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020902
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023361
167393863 - 167421205
27343
ENSAPLT00000043730
167393863 - 167421205
27343