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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_167697557_167699366_F

Intron Information:

Intron Rank:
138186
Intron Class:
major
Intron Phase:
Intron Coordinates:
167697557 - 167699366
Intron Length:
1810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACCTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
48.8
-0
1.7
62.12
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024321
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026596
167697085 - 167728589
31505