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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16797873_16798199_F

Intron Information:

Intron Rank:
143437
Intron Class:
major
Intron Phase:
Intron Coordinates:
16797873 - 16798199
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACTTATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93
0.97
0.7
88.8
27.4
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
59.6
0.38
1.7
75.41
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027273
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042756
16789687 - 16798260
8574