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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16820273_16821362_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16820273 - 16821362
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
ACTGTCTGACTT
Flanking Amino Acid:
LGQGGASSRGGEVASMAPAP
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
79.8
0.67
0.7
77.5
24.4
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46.8
-0.1
1.8
61.99
42.8

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021968
16820224 - 17178990
358767
ENSAPLT00000035598
16820224 - 17254308
434085
ENSAPLT00000035539
16820224 - 17214874
394651
ENSAPLT00000027283
16820224 - 17363598
543375