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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16821489_16978307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16821489 - 16978307
Intron Length:
156819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTGATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
ILASLLIAYCKRPSEVCGQL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.6
0.44
0.9
61.8
44.3
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035539
16820224 - 17214874
394651
ENSAPLT00000027283
16820224 - 17363598
543375