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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_168386707_168386973_R

Intron Information:

Intron Rank:
131689
Intron Class:
major
Intron Phase:
Intron Coordinates:
168386707 - 168386973
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045257
168386628 - 168387770
1143