Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_169069812_169078678_R

Intron Information:

Intron Rank:

130231

Intron Class:

major

Intron Phase:

Intron Coordinates:

169069812 - 169078678

Intron Length:

8867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTAA

5'SS Class:

major

3'SS Sequence:

TCTTTGCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAGAT

U12 Branch Point Sequence:

TAATTTTAGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

32.1

Major BPS

79.2

0.72

Major PPT

87.1

0.83

0.8

84.6

30.3

Minor 5ss

-0.9

2.5

49.8

46.5

Minor BPS

49.9

0.08

1.6

67.16

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017267

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023366

169068934 - 169078844

9911