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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_169117640_169141975_F

Intron Information:

Intron Rank:
126816
Intron Class:
major
Intron Phase:
Intron Coordinates:
169117640 - 169141975
Intron Length:
24336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
0.9
69.9
35.4
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
47.6
-0.3
2
59.82
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018314
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048114
169117109 - 169202302
85194