Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_169142064_169202049_F

Intron Information:

Intron Rank:

126817

Intron Class:

major

Intron Phase:

Intron Coordinates:

169142064 - 169202049

Intron Length:

59986

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCTACTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

TGCATTCTACTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

77.9

38.6

Major BPS

73.5

0.58

79.3

29.4

Major PPT

77.6

0.62

0.8

74.5

34.6

Minor 5ss

33.7

-1.9

41.1

45.5

Minor BPS

41.7

-0.6

1.8

47.31

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018314

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048114

169117109 - 169202302

85194