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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_169237857_169237911_F

Intron Information:

Intron Rank:
82304
Intron Class:
major
Intron Phase:
Intron Coordinates:
169237857 - 169237911
Intron Length:
55

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTGATT
5'SS Class:
major
3'SS Sequence:
CAACGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATCAGCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
73.1
37.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
66.3
0.37
1
61.3
44.1
Minor 5ss
38.9
-1.2
3.3
57
47.4
Minor BPS
48
-0.1
2
63.61
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012152
169237386 - 169239465
2080