Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_169498840_169513771_R

Intron Information:

Intron Rank:

151297

Intron Class:

major

Intron Phase:

Intron Coordinates:

169498840 - 169513771

Intron Length:

14932

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

CACTGTGTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTCCAATTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

1.1

77.3

37.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

71.5

0.48

63.8

41.5

Minor 5ss

35.1

-1.7

2.8

42.9

Minor BPS

60.4

0.4

1.8

80.09

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031781

169489352 - 169513955

24604