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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16974027_16978307_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16974027 - 16978307
Intron Length:
4281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTTCT
5'SS Class:
major
3'SS Sequence:
GTGATTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
TTLLIICFELERPSEVCGQL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.7
39.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.6
0.44
0.9
61.8
44.3
Minor 5ss
41.9
-0.9
3.1
59.5
45
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001248
16930610 - 17178990
248381