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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16978329_17049432_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16978329 - 17049432
Intron Length:
71104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAG
U12 Branch Point Sequence:
ATTCAGTGACTC
Flanking Amino Acid:
FELERPSEVCGQLAAGTCEI
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.1
35.6
Major BPS
55.9
0.15
1.5
67
39.8
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
44.3
-0.6
2.9
55.7
43.3
Minor BPS
38.9
-0.8
2.3
52.12
39

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027283
16820224 - 17363598
543375
ENSAPLT00000001248
16930610 - 17178990
248381
ENSAPLT00000035539
16820224 - 17214874
394651