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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_16985286_16985438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16985286 - 16985438
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTGTTTAATC
Flanking Amino Acid:
PLLEALVLLPGLIQDGRVRA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.9
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.6
0.42
0.9
64.6
35.3
Minor 5ss
34.2
-1.8
2.8
40.2
45.9
Minor BPS
66.6
0.5
1.7
75.04
35.9

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027322
16984970 - 17252510
267541