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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170273160_170273583_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
170273160 - 170273583
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTCTTTTAAAT
Flanking Amino Acid:
TITSGLKNYLRCLSEPLMTF
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.8
0.65
0.9
72.3
38
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
66.1
0.58
1.3
79.19
36.4

Associated Gene:

Gene:
ARHGAP42
Ensembl Gene ID:
ENSAPLG00000016036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043970
170256244 - 170411714
155471
ENSAPLT00000016740
170256244 - 170411714
155471