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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170274445_170276244_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170274445 - 170276244
Intron Length:
1800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCCTATTT
Flanking Amino Acid:
RKCIYAVETRGITILGLYRI
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
100
1.24
0.5
100
0
Major PPT
72.3
0.5
0.9
67
33
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
65.9
0.58
1.9
88.76
36.3

Associated Gene:

Gene:
ARHGAP42
Ensembl Gene ID:
ENSAPLG00000016036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043970
170256244 - 170411714
155471
ENSAPLT00000016740
170256244 - 170411714
155471