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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170279296_170280294_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170279296 - 170280294
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
IAETKSGGKVNGLVTSSPEI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
ARHGAP42
Ensembl Gene ID:
ENSAPLG00000016036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043970
170256244 - 170411714
155471
ENSAPLT00000016740
170256244 - 170411714
155471