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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170294954_170318910_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170294954 - 170318910
Intron Length:
23957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
ACATCTATATTT
Flanking Amino Acid:
FRKEQIGAAKADTQIDREHQ
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
84
0.77
0.7
82
30
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
47.9
-0
1.8
63.75
41.1

Associated Gene:

Gene:
ARHGAP42
Ensembl Gene ID:
ENSAPLG00000016036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043970
170256244 - 170411714
155471