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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170318983_170353051_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170318983 - 170353051
Intron Length:
34069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTAACTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTGTGTTAACT
Flanking Amino Acid:
IAVEEERRRLIQNANDVLIA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
78.1
0.63
0.9
73.7
41.3
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
64.4
0.53
2.1
86.99
39.2

Associated Gene:

Gene:
ARHGAP42
Ensembl Gene ID:
ENSAPLG00000016036
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016740
170256244 - 170411714
155471
ENSAPLT00000043970
170256244 - 170411714
155471