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Intron Name: Anas_platyrhynchos_platyrhynchos_1_17049583_17174679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17049583 - 17174679

Intron Length:

125097

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

TTRARPACVDARIIKTKQWC

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

77.2

37.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.88

0.8

88.7

28.3

Minor 5ss

35.3

-1.7

3.1

46.5

42.9

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

TAFA5

Ensembl Gene ID:

ENSAPLG00000029978

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027283

16820224 - 17363598

543375

ENSAPLT00000035598

16820224 - 17254308

434085

ENSAPLT00000021968

16820224 - 17178990

358767

ENSAPLT00000035539

16820224 - 17214874

394651

ENSAPLT00000001248

16930610 - 17178990

248381

ENSAPLT00000028741

16930258 - 17233185

302928

ENSAPLT00000043106

16930258 - 17237267

307010

ENSAPLT00000027322

16984970 - 17252510

267541

ENSAPLT00000037320

16930258 - 17194739

264482