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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170513891_170515074_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170513891 - 170515074
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTCTTTAGTT
Flanking Amino Acid:
SPQIRVPSFVGGKVTSAQTT
Intron Amino Acid Position:
1067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
70.4
0.72
1.5
83.32
38.7

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543