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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170517566_170526641_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170517566 - 170526641
Intron Length:
9076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
CACTCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCCTTTTATCA
Flanking Amino Acid:
ESLGRPQGFEVGYWKDMEQE
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.1
0.59
0.9
69.2
35.5
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
57.5
0.23
1.6
67.74
39.2

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191